|
1. CCL19-producing fibroblasts promote tertiary lymphoid structure formation enhancing anti-tumor IgG response in colorectal cancer liver metastasis
Zhang Y et al. Cancer Cell. 2024 Aug 12;42(8):1370-1385.e9. doi: 10.1016/j.ccell.2024.07.006.
2. Exome-wide association study identifies KDELR3 mutations in extreme myopia
Yuan J et al. Nat Commun. 2024 Aug 7;15(1):6703. doi: 10.1038/s41467-024-50580-x.
3. A molecular pathway for cancer cachexia-induced muscle atrophy revealed at single-nucleus resolution
Zhang Y et al. Cell Rep. 2024 Aug 7;43(8):114587. doi: 10.1016/j.celrep.2024.114587. Online ahead of print.
4. scTab: Scaling cross-tissue single-cell annotation models
Fischer F et al. Nat Commun. 2024 Aug 4;15(1):6611. doi: 10.1038/s41467-024-51059-5.
5. Computational methods for allele-specific expression in single cells
Qi G et al. Trends Genet. 2024 Aug 10:S0168-9525(24)00169-0. doi: 10.1016/j.tig.2024.07.003. Online ahead of print.
6. A plant-specific clade of serine/arginine-rich proteins regulates RNA splicing homeostasis and thermotolerance in tomato
Rosenkranz RRE et al. Nucleic Acids Res. 2024 Aug 24:gkae730. doi: 10.1093/nar/gkae730. Online ahead of print.
7. Deciphering cell-cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network
Yang W et al. Nat Commun. 2024 Aug 18;15(1):7101. doi: 10.1038/s41467-024-51329-2.
8. A gene regulatory network-aware graph learning method for cell identity annotation in single-cell RNA-seq data
Zhao M et al. Genome Res. 2024 Aug 20;34(7):1036-1051. doi: 10.1101/gr.278439.123.
9. Benchmarking bulk and single-cell variant calling approaches on Chromium scRNA-seq and scATAC-seq libraries
Wiens MVJ et al. Genome Res. 2024 Aug 15:gr.277066.122. doi: 10.1101/gr.277066.122. Online ahead of print.
10. Single-cell dissection of the human blood-brain barrier and glioma blood-tumor barrier
Xie Y et al. Neuron. 2024 Aug 19:S0896-6273(24)00571-3. doi: 10.1016/j.neuron.2024.07.026. Online ahead of print.
11. Comparative single-cell analyses identify shared and divergent features of human and mouse kidney development
Kim S et al. Dev Cell. 2024 Aug 7:S1534-5807(24)00450-7. doi: 10.1016/j.devcel.2024.07.013. Online ahead of print.
12. YAP1 Inhibition Induces Phenotype Switching of Cancer-Associated Fibroblasts to Tumor Suppressive in Prostate Cancer
Song H et al. Cancer Res. 2024 Aug 13. doi: 10.1158/0008-5472.CAN-24-0932. Online ahead of print.
13. Deciphering deep-sea chemosynthetic symbiosis by single-nucleus RNA-sequencing
Wang H et al. Elife. 2024 Aug 5;12:RP88294. doi: 10.7554/eLife.88294.
14. A single-cell transcriptomic census of mammalian olfactory epithelium aging
Li W et al. Dev Cell. 2024 Aug 17:S1534-5807(24)00482-9. doi: 10.1016/j.devcel.2024.07.020. Online ahead of print.
15. Evaluating batch correction methods for image-based cell profiling
Arevalo J et al. Nat Commun. 2024 Aug 2;15(1):6516. doi: 10.1038/s41467-024-50613-5.
16. Associating transcription factors to single-cell trajectories with DREAMIT
Maulding ND et al. Genome Biol. 2024 Aug 14;25(1):220. doi: 10.1186/s13059-024-03368-7.
17. RNA interacts with topoisomerase I to adjust DNA topology
Bhola M et al. Mol Cell. 2024 Aug 19:S1097-2765(24)00630-0. doi: 10.1016/j.molcel.2024.07.032. Online ahead of print.
18. RNA interactome of hypervirulent Klebsiella pneumoniae reveals a small RNA inhibitor of capsular mucoviscosity and virulence
Wu K et al. Nat Commun. 2024 Aug 13;15(1):6946. doi: 10.1038/s41467-024-51213-z.
19. Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer
Byrne A et al. Nat Commun. 2024 Aug 12;15(1):6916. doi: 10.1038/s41467-024-51252-6.
20. STdGCN: spatial transcriptomic cell-type deconvolution using graph convolutional networks
Li Y et al. Genome Biol. 2024 Aug 5;25(1):206. doi: 10.1186/s13059-024-03353-0.
21. scPriorGraph: constructing biosemantic cell-cell graphs with prior gene set selection for cell type identification from scRNA-seq data
Cao X et al. Genome Biol. 2024 Aug 5;25(1):207. doi: 10.1186/s13059-024-03357-w.
22. C5aR1 antagonism suppresses inflammatory glial responses and alters cellular signaling in an Alzheimer's disease mouse model
Schartz ND et al. Nat Commun. 2024 Aug 15;15(1):7028. doi: 10.1038/s41467-024-51163-6.
23. Transcriptional noise, gene activation, and roles of SAGA and Mediator Tail measured using nucleotide recoding single-cell RNA-seq
Schofield JA et al. Cell Rep. 2024 Aug 4;43(8):114593. doi: 10.1016/j.celrep.2024.114593. Online ahead of print.
24. DAZAP1 Phase Separation Regulates Mitochondrial Metabolism to Facilitate Invasion and Metastasis of Oral Squamous Cell Carcinoma
Zhang J et al. Cancer Res. 2024 Aug 9. doi: 10.1158/0008-5472.CAN-24-0067. Online ahead of print.
25. FRA1 controls acinar cell plasticity during murine Kras(G12D)-induced pancreatic acinar to ductal metaplasia
Li AL et al. Dev Cell. 2024 Aug 17:S1534-5807(24)00483-0. doi: 10.1016/j.devcel.2024.07.021. Online ahead of print.
26. An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia
Torres-Diz M et al. Cancer Res. 2024 Aug 2. doi: 10.1158/0008-5472.CAN-23-3804. Online ahead of print.
27. Unexpected nuclear hormone receptor and chromatin dynamics regulate estrous cycle dependent gene expression
Jefferson WN et al. Nucleic Acids Res. 2024 Aug 21:gkae714. doi: 10.1093/nar/gkae714. Online ahead of print.
28. Actin networks modulate heterogenous NF-κB dynamics in response to TNFα
Butera F et al. Elife. 2024 Aug 7;13:e86042. doi: 10.7554/eLife.86042. Online ahead of print.
29. Clinical efficacy and immune response of neoadjuvant camrelizumab plus chemotherapy in resectable locally advanced oesophageal squamous cell carcinoma: a phase 2 trial
Chen YY et al. Br J Cancer. 2024 Aug 20. doi: 10.1038/s41416-024-02805-5. Online ahead of print.
30. Spatial transcriptomics reveals profound subclonal heterogeneity and T-cell dysfunction in extramedullary myeloma
John M et al. Blood. 2024 Aug 20:blood.2024024590. doi: 10.1182/blood.2024024590. Online ahead of print.
31. Single-plant-omics reveals the cascade of transcriptional changes during the vegetative-to-reproductive transition
Redmond EJ et al. Plant Cell. 2024 Aug 9:koae226. doi: 10.1093/plcell/koae226. Online ahead of print.
32. Overlooked poor-quality patient samples in sequencing data impair reproducibility of published clinically relevant datasets
Sprang M et al. Genome Biol. 2024 Aug 16;25(1):222. doi: 10.1186/s13059-024-03331-6.
33. scParser: sparse representation learning for scalable single-cell RNA sequencing data analysis
Zhao K et al. Genome Biol. 2024 Aug 16;25(1):223. doi: 10.1186/s13059-024-03345-0.
34. The nutrient sensor CRTC and Sarcalumenin/thinman represent an alternate pathway in cardiac hypertrophy
Dondi C et al. Cell Rep. 2024 Aug 1;43(8):114549. doi: 10.1016/j.celrep.2024.114549. Online ahead of print.
35. Single-cell transcriptomics reveal transcriptional programs underlying male and female cell fate during Plasmodium falciparum gametocytogenesis
Mohammed M et al. Nat Commun. 2024 Aug 26;15(1):7177. doi: 10.1038/s41467-024-51201-3.
36. Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO
Hamrock FJ et al. Nucleic Acids Res. 2024 Aug 16:gkae668. doi: 10.1093/nar/gkae668. Online ahead of print.
37. Translation in Bacillus subtilis is spatially and temporally coordinated during sporulation
Iwańska O et al. Nat Commun. 2024 Aug 21;15(1):7188. doi: 10.1038/s41467-024-51654-6.
38. Nuclear retention coupled with sequential polyadenylation dictates post-transcriptional m(6)A modification in the nucleus
Tang P et al. Mol Cell. 2024 Aug 1:S1097-2765(24)00593-8. doi: 10.1016/j.molcel.2024.07.017. Online ahead of print.
39. Tissue characterization at an enhanced resolution across spatial omics platforms with deep generative model
Li B et al. Nat Commun. 2024 Aug 2;15(1):6541. doi: 10.1038/s41467-024-50837-5.
40. Inferring histology-associated gene expression gradients in spatial transcriptomic studies
Kueckelhaus J et al. Nat Commun. 2024 Aug 23;15(1):7280. doi: 10.1038/s41467-024-50904-x.
41. Synergistic activation by Glass and Pointed promotes neuronal identity in the Drosophila eye disc
Wang H et al. Nat Commun. 2024 Aug 17;15(1):7091. doi: 10.1038/s41467-024-51429-z.
42. A human fetal cerebellar map of the late second trimester reveals developmental molecular characteristics and abnormality in trisomy 21
Yu H et al. Cell Rep. 2024 Aug 12;43(8):114586. doi: 10.1016/j.celrep.2024.114586. Online ahead of print.
43. Teplizumab induces persistent changes in the antigen-specific repertoire in individuals at-risk for type 1 diabetes
Lledó-Delgado A et al. J Clin Invest. 2024 Aug 13:e177492. doi: 10.1172/JCI177492. Online ahead of print.
44. The Possible Earliest Allopolyploidization in Tracheophytes Revealed by Phylotranscriptomics and Morphology of Selaginellaceae
Kang JS et al. Mol Biol Evol. 2024 Aug 2;41(8):msae153. doi: 10.1093/molbev/msae153.
45. Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone
Huang R et al. Nat Commun. 2024 Aug 6;15(1):6684. doi: 10.1038/s41467-024-51026-0.
46. Human liver sinusoidal endothelial cells support the development of functional human pluripotent stem cell-derived Kupffer cells
Kent GM et al. Cell Rep. 2024 Aug 14;43(8):114629. doi: 10.1016/j.celrep.2024.114629. Online ahead of print.
47. Limb reduction in an Esco2 cohesinopathy mouse model is mediated by p53-dependent apoptosis and vascular disruption
Strasser AS et al. Nat Commun. 2024 Aug 21;15(1):7154. doi: 10.1038/s41467-024-51328-3.
48. Prdm1 positively regulates liver Group 1 ILCs cancer immune surveillance and preserves functional heterogeneity
He J et al. Elife. 2024 Aug 12;13:RP92948. doi: 10.7554/eLife.92948.
49. Comprehensive mapping and modelling of the rice regulome landscape unveils the regulatory architecture underlying complex traits
Zhu T et al. Nat Commun. 2024 Aug 3;15(1):6562. doi: 10.1038/s41467-024-50787-y.
50. APOE ε4-associated downregulation of the IL-7/IL-7R pathway in effector memory T cells: Implications for Alzheimer's disease
Zhang YJ et al. Alzheimers Dement. 2024 Aug 11. doi: 10.1002/alz.14173. Online ahead of print.
51. The SAGA acetyltransferase module is required for the maintenance of MAF and MYC oncogenic gene expression programs in multiple myeloma
Chen YC et al. Genes Dev. 2024 Aug 21. doi: 10.1101/gad.351789.124. Online ahead of print.
52. Loss of cold tolerance is conferred by absence of the WRKY34 promoter fragment during tomato evolution
Guo M et al. Nat Commun. 2024 Aug 6;15(1):6667. doi: 10.1038/s41467-024-51036-y.
53. RNA polymerases reshape chromatin architecture and couple transcription on individual fibers
Tullius TW et al. Mol Cell. 2024 Aug 23:S1097-2765(24)00667-1. doi: 10.1016/j.molcel.2024.08.013. Online ahead of print.
54. Coordination of transcription-coupled repair and repair-independent release of lesion-stalled RNA polymerase II
Zhu Y et al. Nat Commun. 2024 Aug 17;15(1):7089. doi: 10.1038/s41467-024-51463-x.
55. CRISPR Screening of Transcribed Super-Enhancers Identifies Drivers of Triple-Negative Breast Cancer Progression
Lewis MW et al. Cancer Res. 2024 Aug 26. doi: 10.1158/0008-5472.CAN-23-3995. Online ahead of print.
56. Single-cell multiomic analysis identifies macrophage subpopulations in promoting cardiac repair
Fu M et al. J Clin Invest. 2024 Aug 27:e175297. doi: 10.1172/JCI175297. Online ahead of print.
57. Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics
Almet AA et al. Nat Methods. 2024 Aug 26. doi: 10.1038/s41592-024-02380-w. Online ahead of print.
58. Hosts manipulate lifestyle switch and pathogenicity heterogeneity of opportunistic pathogens in the single-cell resolution
Wang Z et al. Elife. 2024 Aug 27;13:RP96789. doi: 10.7554/eLife.96789.
59. Flavonols improve tomato pollen thermotolerance during germination and tube elongation by maintaining ROS homeostasis
Postiglione AE et al. Plant Cell. 2024 Aug 5:koae222. doi: 10.1093/plcell/koae222. Online ahead of print.
60. Mutations in linker-2 of KLF1 impair expression of membrane transporters and cytoskeletal proteins causing hemolysis
Huang S et al. Nat Commun. 2024 Aug 15;15(1):7019. doi: 10.1038/s41467-024-50579-4.
61. The senescence-associated secretome of hedgehog-deficient hepatocytes drives MASLD progression
Jun JH et al. J Clin Invest. 2024 Aug 27:e180310. doi: 10.1172/JCI180310. Online ahead of print.
62. PTPN14 aggravates neointimal hyperplasia via boosting PDGFRβ signaling in smooth muscle cells
Ma Q et al. Nat Commun. 2024 Aug 27;15(1):7398. doi: 10.1038/s41467-024-51881-x.
63. Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition
Cheng YC et al. Proc Natl Acad Sci U S A. 2024 Aug 6;121(32):e2406842121. doi: 10.1073/pnas.2406842121. Epub 2024 Aug 2.
64. Improvement of a mouse infection model to capture Pseudomonas aeruginosa chronic physiology in cystic fibrosis
Duncan RP et al. Proc Natl Acad Sci U S A. 2024 Aug 13;121(33):e2406234121. doi: 10.1073/pnas.2406234121. Epub 2024 Aug 5.
65. An IL-23-STAT4 pathway is required for the proinflammatory function of classical dendritic cells during CNS inflammation
Alakhras NS et al. Proc Natl Acad Sci U S A. 2024 Aug 6;121(32):e2400153121. doi: 10.1073/pnas.2400153121. Epub 2024 Aug 1.
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