Monthly Letter

1. MicroRNA regulation of persistent stress-enhanced memory.
Sillivan SE, Jamieson S, de Nijs L, Jones M, Snijders C, Klengel T, Joseph NF, Krauskopf J, Kleinjans J, Vinkers CH, Boks MPM, Geuze E, Vermetten E, Berretta S, Ressler KJ, Rutten BPF, Rumbaugh G, Miller CA. Mol Psychiatry. 2020 May;25(5):965-976. doi: 10.1038/s41380-019-0432-2. Epub 2019 May 29.

2. Minimal PD-1 expression in mouse and human NK cells under diverse conditions.
Judge SJ, Dunai C, Aguilar EG, Vick SC, Sturgill IR, Khuat LT, Stoffel KM, Van Dyke J, Longo DL, Darrow MA, Anderson SK, Blazar BR, Monjazeb AM, Serody JS, Canter RJ, Murphy WJ. J Clin Invest. 2020 May 11:133353. doi: 10.1172/JCI133353.

3. A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors.
Slyper M, Porter CBM, Ashenberg O, Waldman J, Drokhlyansky E, Wakiro I, Smillie C, Smith-Rosario G, Wu J, Dionne D, Vigneau S, Jané-Valbuena J, Tickle TL, Napolitano S, Su MJ, Patel AG, Karlstrom A, Gritsch S, Nomura M, Waghray A, Gohil SH, Tsankov AM, Jerby-Arnon L, Cohen O, Klughammer J, Rosen Y, Gould J, Nguyen L, Hofree M, Tramontozzi PJ, Li B, Wu CJ, Izar B, Haq R, Hodi FS, Yoon CH, Hata AN, Baker SJ, Suvà ML, Bueno R, Stover EH, Clay MR, Dyer MA, Collins NB, Matulonis UA, Wagle N, Johnson BE, Rotem A, Rozenblatt-Rosen O, Regev A. Nat Med. 2020 May;26(5):792-802. doi: 10.1038/s41591-020-0844-1. Epub 2020 May 11.

4. Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.
Shu S, Wu HJ, Ge JY, Zeid R, Harris IS, Jovanović B, Murphy K, Wang B, Qiu X, Endress JE, Reyes J, Lim K, Font-Tello A, Syamala S, Xiao T, Reddy Chilamakuri CS, Papachristou EK, D'Santos C, Anand J, Hinohara K, Li W, McDonald TO, Luoma A, Modiste RJ, Nguyen QD, Michel B, Cejas P, Kadoch C, Jaffe JD, Wucherpfennig KW, Qi J, Liu XS, Long H, Brown M, Carroll JS, Brugge JS, Bradner J, Michor F, Polyak K. Mol Cell. 2020 May 7:S1097-2765(20)30269-0. doi: 10.1016/j.molcel.2020.04.027.

5. Developmental trajectory of pre-hematopoietic stem cell formation from endothelium.
Zhu Q, Gao P, Tober J, Bennett L, Chen C, Uzun Y, Li Y, Howell ED, Mumau M, Yu W, He B, Speck NA, Tan K. Blood. 2020 May 11:blood.2020004801. doi: 10.1182/blood.2020004801.

6. Srebf1 Controls Midbrain Dopaminergic Neurogenesis.
Toledo EM, Yang S, Gyllborg D, van Wijk KE, Sinha I, Varas-Godoy M, Grigsby CL, Lönnerberg P, Islam S, Steffensen KR, Linnarsson S, Arenas E. Cell Rep. 2020 May 5;31(5):107601. doi: 10.1016/j.celrep.2020.107601.

7. A single-cell survey of Drosophila blood.
Tattikota SG, Cho B, Liu Y, Hu Y, Barrera V, Steinbaugh MJ, Yoon SH, Comjean A, Li F, Dervis F, Hung RJ, Nam JW, Ho Sui S, Shim J, Perrimon N. Elife. 2020 May 12;9:e54818. doi: 10.7554/eLife.54818.

8. Sel1L-Hrd1 ER-associated degradation maintains β cell identity via TGF-β signaling.
Shrestha N, Liu T, Ji Y, Reinert RB, Torres M, Li X, Zhang M, Tang CA, Hu CA, Liu C, Naji A, Liu M, Lin JD, Kersten S, Arvan P, Qi L. J Clin Invest. 2020 May 26:134874. doi: 10.1172/JCI134874.

9. Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes.
Heaton H, Talman AM, Knights A, Imaz M, Gaffney DJ, Durbin R, Hemberg M, Lawniczak MKN. Nat Methods. 2020 May 4. doi: 10.1038/s41592-020-0820-1.

10. Exploring dimension-reduced embeddings with Sleepwalk.
Ovchinnikova S, Anders S. Genome Res. 2020 May;30(5):749-756. doi: 10.1101/gr.251447.119. Epub 2020 May 19.

11. Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines.
Kagohara LT, Zamuner F, Davis-Marcisak EF, Sharma G, Considine M, Allen J, Yegnasubramanian S, Gaykalova DA, Fertig EJ. Br J Cancer. 2020 May 4. doi: 10.1038/s41416-020-0851-5.

12. Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Lu Y, Shiau F, Yi W, Lu S, Wu Q, Pearson JD, Kallman A, Zhong S, Hoang T, Zuo Z, Zhao F, Zhang M, Tsai N, Zhuo Y, He S, Zhang J, Stein-O'Brien GL, Sherman TD, Duan X, Fertig EJ, Goff LA, Zack DJ, Handa JT, Xue T, Bremner R, Blackshaw S, Wang X, Clark BS. Dev Cell. 2020 May 18;53(4):473-491.e9. doi: 10.1016/j.devcel.2020.04.009. Epub 2020 May 7.

13. Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis.
Li X, Wang K, Lyu Y, Pan H, Zhang J, Stambolian D, Susztak K, Reilly MP, Hu G, Li M. Nat Commun. 2020 May 11;11(1):2338. doi: 10.1038/s41467-020-15851-3.

14. Expression of the SARS-CoV-2 ACE2 Receptor in the Human Airway Epithelium.
Zhang H, Rostami MR, Leopold PL, Mezey JG, O'Beirne SL, Strulovici-Barel Y, Crystal RG. Am J Respir Crit Care Med. 2020 May 20. doi: 10.1164/rccm.202003-0541OC.

15. Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease.
Tiklová K, Nolbrant S, Fiorenzano A, Björklund ÅK, Sharma Y, Heuer A, Gillberg L, Hoban DB, Cardoso T, Adler AF, Birtele M, Lundén-Miguel H, Volakakis N, Kirkeby A, Perlmann T, Parmar M. Nat Commun. 2020 May 15;11(1):2434. doi: 10.1038/s41467-020-16225-5.

16. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics.
Bravo González-Blas C, Quan XJ, Duran-Romaña R, Taskiran II, Koldere D, Davie K, Christiaens V, Makhzami S, Hulselmans G, de Waegeneer M, Mauduit D, Poovathingal S, Aibar S, Aerts S. Mol Syst Biol. 2020 May;16(5):e9438. doi: 10.15252/msb.20209438.

17. Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis.
Ding SL, Yao Z, Hirokawa KE, Nguyen TN, Graybuck LT, Fong O, Bohn P, Ngo K, Smith KA, Koch C, Phillips JW, Lein ES, Harris JA, Tasic B, Zeng H. Cell Rep. 2020 May 19;31(7):107648. doi: 10.1016/j.celrep.2020.107648.

18. Putative cell type discovery from single-cell gene expression data.
Miao Z, Moreno P, Huang N, Papatheodorou I, Brazma A, Teichmann SA. Nat Methods. 2020 May 18. doi: 10.1038/s41592-020-0825-9.

19. A Multiplexed Barcodelet Single-Cell RNA-Seq Approach Elucidates Combinatorial Signaling Pathways that Drive ESC Differentiation.
Yeo GHT, Lin L, Qi CY, Cha M, Gifford DK, Sherwood RI. Cell Stem Cell. 2020 May 21:S1934-5909(20)30159-4. doi: 10.1016/j.stem.2020.04.020.

20. Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.
Marquina-Sanchez B, Fortelny N, Farlik M, Vieira A, Collombat P, Bock C, Kubicek S. Genome Biol. 2020 May 6;21(1):106. doi: 10.1186/s13059-020-02006-2.

21. A Quantitative Framework for Evaluating Single-Cell Data Structure Preservation by Dimensionality Reduction Techniques.
Heiser CN, Lau KS. Cell Rep. 2020 May 5;31(5):107576. doi: 10.1016/j.celrep.2020.107576.

22. A new protocol for single-cell RNA-seq reveals stochastic gene expression during lag phase in budding yeast.
Jariani A, Vermeersch L, Cerulus B, Perez-Samper G, Voordeckers K, Van Brussel T, Thienpont B, Lambrechts D, Verstrepen KJ. Elife. 2020 May 18;9:e55320. doi: 10.7554/eLife.55320.

23. MEDEA: analysis of transcription factor binding motifs in accessible chromatin.
Mariani L, Weinand K, Gisselbrecht SS, Bulyk ML. Genome Res. 2020 May;30(5):736-748. doi: 10.1101/gr.260877.120. Epub 2020 May 18.

24. State-transition analysis of time-sequential gene expression identifies critical points that predict development of acute myeloid leukemia.
Rockne RC, Branciamore S, Qi J, Frankhouser DE, O'Meally D, Hua WK, Cook G, Carnahan E, Zhang L, Marom A, Wu H, Maestrini D, Wu X, Yuan YC, Liu Z, Wang LD, Forman S, Carlesso N, Kuo YH, Marcucci G. Cancer Res. 2020 May 15:canres.0354.2020. doi: 10.1158/0008-5472.CAN-20-0354.

25. Opposing Functions of BRD4 Isoforms in Breast Cancer.
Wu SY, Lee CF, Lai HT, Yu CT, Lee JE, Zuo H, Tsai SY, Tsai MJ, Ge K, Wan Y, Chiang CM. Mol Cell. 2020 May 23:S1097-2765(20)30276-8. doi: 10.1016/j.molcel.2020.04.034.

26. Multispecies RNA tomography reveals regulators of hematopoietic stem cell birth in the embryonic aorta.
Yvernogeau L, Klaus A, Maas J, Morin-Poulard I, Weijts B, Schulte-Merker S, Berezikov E, Junker JP, Robin C. Blood. 2020 May 26:blood.2019004446. doi: 10.1182/blood.2019004446.

27. Dengue virus targets RBM10 deregulating host cell splicing and innate immune response.
Pozzi B, Bragado L, Mammi P, Torti MF, Gaioli N, Gebhard LG, García Solá ME, Vaz-Drago R, Iglesias NG, García CC, Gamarnik AV, Srebrow A. Nucleic Acids Res. 2020 May 20:gkaa340. doi: 10.1093/nar/gkaa340.

28. Single-Cell Analyses of Colon and Blood Reveal Distinct Immune Cell Signatures of Ulcerative Colitis and Crohn's Disease.
Mitsialis V, Wall S, Liu P, Ordovas-Montanes J, Parmet T, Vukovic M, Spencer D, Field M, McCourt C, Toothaker J, Bousvaros A; BCH IBD Center; BWH Crohn’s and Colitis Center, Shalek AK, Kean L, Horwitz B, Goldsmith J, Tseng G, Snapper SB, Konnikova L. Gastroenterology. 2020 May 16:S0016-5085(20)30658-2. doi: 10.1053/j.gastro.2020.04.074.

29. Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal.
Lau KX, Mason EA, Kie J, De Souza DP, Kloehn J, Tull D, McConville MJ, Keniry A, Beck T, Blewitt ME, Ritchie ME, Naik SH, Zalcenstein D, Korn O, Su S, Romero IG, Spruce C, Baker CL, McGarr TC, Wells CA, Pera MF. Nat Commun. 2020 May 15;11(1):2420. doi: 10.1038/s41467-020-16214-8.

30. ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses.
David FPA, Litovchenko M, Deplancke B, Gardeux V. Nucleic Acids Res. 2020 May 25:gkaa412. doi: 10.1093/nar/gkaa412.

31. miRSwitch: detecting microRNA arm shift and switch events.
Kern F, Amand J, Senatorov I, Isakova A, Backes C, Meese E, Keller A, Fehlmann T. Nucleic Acids Res. 2020 May 1:gkaa323. doi: 10.1093/nar/gkaa323.

32. Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth.
Davidson S, Efremova M, Riedel A, Mahata B, Pramanik J, Huuhtanen J, Kar G, Vento-Tormo R, Hagai T, Chen X, Haniffa MA, Shields JD, Teichmann SA. Cell Rep. 2020 May 19;31(7):107628. doi: 10.1016/j.celrep.2020.107628.

33. ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing.
Fan J, Hu J, Xue C, Zhang H, Susztak K, Reilly MP, Xiao R, Li M. PLoS Genet. 2020 May 11;16(5):e1008786. doi: 10.1371/journal.pgen.1008786. eCollection 2020 May.

34. IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.
Ma A, Wang C, Chang Y, Brennan FH, McDermaid A, Liu B, Zhang C, Popovich PG, Ma Q. Nucleic Acids Res. 2020 May 18:gkaa394. doi: 10.1093/nar/gkaa394.

35. Protection from DNA re-methylation by transcription factors in primordial germ cells and pre-implantation embryos can explain trans-generational epigenetic inheritance.
Kremsky I, Corces VG. Genome Biol. 2020 May 18;21(1):118. doi: 10.1186/s13059-020-02036-w.

36. Generation and Profiling of 2,135 Human ESC Lines for the Systematic Analyses of Cell States Perturbed by Inducing Single Transcription Factors.
Nakatake Y, Ko SBH, Sharov AA, Wakabayashi S, Murakami M, Sakota M, Chikazawa N, Ookura C, Sato S, Ito N, Ishikawa-Hirayama M, Mak SS, Jakt LM, Ueno T, Hiratsuka K, Matsushita M, Goparaju SK, Akiyama T, Ishiguro KI, Oda M, Gouda N, Umezawa A, Akutsu H, Nishimura K, Matoba R, Ohara O, Ko MSH. Cell Rep. 2020 May 19;31(7):107655. doi: 10.1016/j.celrep.2020.107655.

37. Sense-antisense miRNA pairs constitute an elaborate reciprocal regulatory circuit.
Song Y, Li L, Yang W, Fu Q, Chen W, Fang Z, Li W, Gu N, Zhang R. Genome Res. 2020 May;30(5):661-672. doi: 10.1101/gr.257121.119. Epub 2020 May 18.

38. Single-nucleus RNA sequencing of mouse auditory cortex reveals critical period triggers and brakes.
Kalish BT, Barkat TR, Diel EE, Zhang EJ, Greenberg ME, Hensch TK. Proc Natl Acad Sci U S A. 2020 May 26;117(21):11744-11752. doi: 10.1073/pnas.1920433117. Epub 2020 May 13.

39. Gene expression dynamics are a proxy for selective pressures on alternatively polyadenylated isoforms.
Levin M, Zalts H, Mostov N, Hashimshony T, Yanai I. Nucleic Acids Res. 2020 May 18:gkaa359. doi: 10.1093/nar/gkaa359.

40. Context specificity of the EMT transcriptional response.
Cook DP, Vanderhyden BC. Nat Commun. 2020 May 1;11(1):2142. doi: 10.1038/s41467-020-16066-2.

41. Extracellular Vesicle-Mediated Delivery of CircSCMH1 Promotes Functional Recovery in Rodent and Nonhuman Primate Ischemic Stroke Models.
Yang L, Han B, Zhang Z, Wang S, Bai Y, Zhang Y, Tang Y, Du L, Xu L, Wu F, Zuo L, Chen X, Lin Y, Liu K, Ye Q, Chen B, Li B, Tang T, Wang Y, Shen L, Wang G, Ju M, Yuan M, Jiang W, Zhang JH, Hu G, Wang J, Yao H. Circulation. 2020 May 22. doi: 10.1161/CIRCULATIONAHA.120.045765.

42. Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle.
Fang L, Cai W, Liu S, Canela-Xandri O, Gao Y, Jiang J, Rawlik K, Li B, Schroeder SG, Rosen BD, Li CJ, Sonstegard TS, Alexander LJ, Van Tassell CP, VanRaden PM, Cole JB, Yu Y, Zhang S, Tenesa A, Ma L, Liu GE. Genome Res. 2020 May;30(5):790-801. doi: 10.1101/gr.250704.119. Epub 2020 May 18.

43. The Environment-Sensing Aryl-Hydrocarbon Receptor Inhibits the Chondrogenic Fate of Modulated Smooth Muscle Cells in Atherosclerotic Lesions.
Kim JB, Zhao Q, Nguyen T, Pjanic M, Cheng P, Wirka R, Travisano S, Nagao M, Kundu R, Quertermous T. Circulation. 2020 May 22. doi: 10.1161/CIRCULATIONAHA.120.045981.

44. Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei.
Jiang S, Williams K, Kong X, Zeng W, Nguyen NV, Ma X, Tawil R, Yokomori K, Mortazavi A. PLoS Genet. 2020 May 4;16(5):e1008754. doi: 10.1371/journal.pgen.1008754. eCollection 2020 May.

45. Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes.
Zhang L, Rube HT, Vakulskas CA, Behlke MA, Bussemaker HJ, Pufall MA. Nucleic Acids Res. 2020 May 21;48(9):5037-5053. doi: 10.1093/nar/gkaa231.

46. Putative regulators for the continuum of erythroid differentiation revealed by single-cell transcriptome of human BM and UCB cells.
Huang P, Zhao Y, Zhong J, Zhang X, Liu Q, Qiu X, Chen S, Yan H, Hillyer C, Mohandas N, Pan X, Xu X. Proc Natl Acad Sci U S A. 2020 May 26:201915085. doi: 10.1073/pnas.1915085117.

47. Prp5-Spt8/Spt3 interaction mediates a reciprocal coupling between splicing and transcription.
Shao W, Ding Z, Zheng ZZ, Shen JJ, Shen YX, Pu J, Fan YJ, Query CC, Xu YZ. Nucleic Acids Res. 2020 May 13:gkaa311. doi: 10.1093/nar/gkaa311.

48. A human lung tumor microenvironment interactome identifies clinically relevant cell-type cross-talk.
Gentles AJ, Hui AB, Feng W, Azizi A, Nair RV, Bouchard G, Knowles DA, Yu A, Jeong Y, Bejnood A, Forgó E, Varma S, Xu Y, Kuong A, Nair VS, West R, van de Rijn M, Hoang CD, Diehn M, Plevritis SK. Genome Biol. 2020 May 7;21(1):107. doi: 10.1186/s13059-020-02019-x.

49. Developmentally Programmed Tankyrase Activity Upregulates β-Catenin and Licenses Progression of Embryonic Genome Activation.
Gambini A, Stein P, Savy V, Grow EJ, Papas BN, Zhang Y, Kenan AC, Padilla-Banks E, Cairns BR, Williams CJ. Dev Cell. 2020 May 13:S1534-5807(20)30350-6. doi: 10.1016/j.devcel.2020.04.018.

50. Lead-seq: transcriptome-wide structure probing in vivo using lead(II) ions.
Twittenhoff C, Brandenburg VB, Righetti F, Nuss AM, Mosig A, Dersch P, Narberhaus F. Nucleic Acids Res. 2020 May 28:gkaa404. doi: 10.1093/nar/gkaa404.

51. Characterization of the ZFX family of transcription factors that bind downstream of the start site of CpG island promoters.
Ni W, Perez AA, Schreiner S, Nicolet CM, Farnham PJ. Nucleic Acids Res. 2020 May 14:gkaa384. doi: 10.1093/nar/gkaa384.

52. Discovery of genes required for body axis and limb formation by global identification of retinoic acid-regulated epigenetic marks.
Berenguer M, Meyer KF, Yin J, Duester G. PLoS Biol. 2020 May 18;18(5):e3000719. doi: 10.1371/journal.pbio.3000719.

53. Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy.
Deng J, Yu J, Li P, Luan X, Cao L, Zhao J, Yu M, Zhang W, Lv H, Xie Z, Meng L, Zheng Y, Zhao Y, Gang Q, Wang Q, Liu J, Zhu M, Guo X, Su Y, Liang Y, Liang F, Hayashi T, Maeda MH, Sato T, Ura S, Oya Y, Ogasawara M, Iida A, Nishino I, Zhou C, Yan C, Yuan Y, Hong D, Wang Z. Am J Hum Genet. 2020 May 10:S0002-9297(20)30120-8. doi: 10.1016/j.ajhg.2020.04.011.

54. GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5' and 3' ends of its target genes.
Kim S, Piquerez SJM, Ramirez-Prado JS, Mastorakis E, Veluchamy A, Latrasse D, Manza-Mianza D, Brik-Chaouche R, Huang Y, Rodriguez-Granados NY, Concia L, Blein T, Citerne S, Bendahmane A, Bergounioux C, Crespi M, Mahfouz MM, Raynaud C, Hirt H, Ntoukakis V, Benhamed M. Nucleic Acids Res. 2020 May 12:gkaa369. doi: 10.1093/nar/gkaa369.

55. RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution.
Liu Q, Shvarts T, Sliz P, Gregory RI. Nucleic Acids Res. 2020 May 19:gkaa395. doi: 10.1093/nar/gkaa395.

56. Heterogenous Populations of Tissue-Resident CD8+ T Cells Are Generated in Response to Infection and Malignancy.
Milner JJ, Toma C, He Z, Kurd NS, Nguyen QP, McDonald B, Quezada L, Widjaja CE, Witherden DA, Crowl JT, Shaw LA, Yeo GW, Chang JT, Omilusik KD, Goldrath AW. Immunity. 2020 May 19;52(5):808-824.e7. doi: 10.1016/j.immuni.2020.04.007.

57. H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles.
Belotti E, Lacoste N, Simonet T, Papin C, Padmanabhan K, Scionti I, Gangloff YG, Ramos L, Dalkara D, Hamiche A, Dimitrov S, Schaeffer L. Nucleic Acids Res. 2020 May 21;48(9):4601-4613. doi: 10.1093/nar/gkaa157.

58. The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters.
Gorini F, Scala G, Di Palo G, Dellino GI, Cocozza S, Pelicci PG, Lania L, Majello B, Amente S. Nucleic Acids Res. 2020 May 7;48(8):4309-4324. doi: 10.1093/nar/gkaa175.

59. SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis.
Bajczyk M, Lange H, Bielewicz D, Szewc L, Bhat SS, Dolata J, Kuhn L, Szweykowska-Kulinska Z, Gagliardi D, Jarmolowski A. Nucleic Acids Res. 2020 May 25:gkaa373. doi: 10.1093/nar/gkaa373.

60. Accounting for cell type hierarchy in evaluating single cell RNA-seq clustering.
Wu Z, Wu H. Genome Biol. 2020 May 25;21(1):123. doi: 10.1186/s13059-020-02027-x.

61. Publisher Correction: Single-cell RNA-seq analysis software providers scramble to offer solutions.
Eisenstein M. Nat Biotechnol. 2020 May;38(5):650. doi: 10.1038/s41587-020-0510-7.

62. CDK11 is required for transcription of replication-dependent histone genes.
Gajdušková P, Ruiz de Los Mozos I, Rájecký M, Hluchý M, Ule J, Blazek D. Nat Struct Mol Biol. 2020 May;27(5):500-510. doi: 10.1038/s41594-020-0406-8. Epub 2020 May 4.

63. Geospatial immune variability illuminates differential evolution of lung adenocarcinoma.
AbdulJabbar K, Raza SEA, Rosenthal R, Jamal-Hanjani M, Veeriah S, Akarca A, Lund T, Moore DA, Salgado R, Al Bakir M, Zapata L, Hiley CT, Officer L, Sereno M, Smith CR, Loi S, Hackshaw A, Marafioti T, Quezada SA, McGranahan N, Le Quesne J; TRACERx Consortium, Swanton C, Yuan Y. Nat Med. 2020 May 27. doi: 10.1038/s41591-020-0900-x.

64. An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells.
Colli ML, Ramos-Rodríguez M, Nakayasu ES, Alvelos MI, Lopes M, Hill JLE, Turatsinze JV, Coomans de Brachène A, Russell MA, Raurell-Vila H, Castela A, Juan-Mateu J, Webb-Robertson BM, Krogvold L, Dahl-Jorgensen K, Marselli L, Marchetti P, Richardson SJ, Morgan NG, Metz TO, Pasquali L, Eizirik DL. Nat Commun. 2020 May 22;11(1):2584. doi: 10.1038/s41467-020-16327-0.

65. Whole Genome Sequencing Identifies Novel Functional Loci Associated with Lung Function in Puerto Rican Youth.
Lee EY, Mak AC, Hu D, Sajuthi S, White MJ, Keys KL, Eckalbar W, Bonser L, Huntsman S, Urbanek C, Eng C, Jain D, Abecasis G, Kang HM, Germer S, Zody MC, Nickerson DA, Erle D, Ziv E, Rodriguez-Santana J, Seibold MA, Burchard EG. Am J Respir Crit Care Med. 2020 May 27. doi: 10.1164/rccm.202002-0351OC.

66. Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq.
Adekunle DA, Wang ET. Nucleic Acids Res. 2020 May 18:gkaa334. doi: 10.1093/nar/gkaa334.

67. Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis.
Hua X, Hu G, Hu Q, Chang Y, Hu Y, Gao L, Chen X, Yang PC, Zhang Y, Li M, Song J. Circulation. 2020 May 20. doi: 10.1161/CIRCULATIONAHA.119.043545.

68. Demographic and genetic factors influence the abundance of infiltrating immune cells in human tissues.
Marderstein AR, Uppal M, Verma A, Bhinder B, Tayyebi Z, Mezey J, Clark AG, Elemento O. Nat Commun. 2020 May 5;11(1):2213. doi: 10.1038/s41467-020-16097-9.

69. A role for fat precursors in the marrow.
Ono N. Elife. 2020 May 13;9:e58084. doi: 10.7554/eLife.58084.

70. tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing.
de la Fuente L, Arzalluz-Luque Á, Tardáguila M, Del Risco H, Martí C, Tarazona S, Salguero P, Scott R, Lerma A, Alastrue-Agudo A, Bonilla P, Newman JRB, Kosugi S, McIntyre LM, Moreno-Manzano V, Conesa A. Genome Biol. 2020 May 18;21(1):119. doi: 10.1186/s13059-020-02028-w.

71. Systematic Analysis of Targets of Pumilio-Mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis.
Yamada T, Imamachi N, Imamura K, Taniue K, Kawamura T, Suzuki Y, Nagahama M, Akimitsu N. Cell Rep. 2020 May 5;31(5):107542. doi: 10.1016/j.celrep.2020.107542.

72. Human Glial Progenitor Cells Effectively Remyelinate the Demyelinated Adult Brain.
Windrem MS, Schanz SJ, Zou L, Chandler-Militello D, Kuypers NJ, Nedergaard M, Lu Y, Mariani JN, Goldman SA. Cell Rep. 2020 May 19;31(7):107658. doi: 10.1016/j.celrep.2020.107658.

73. Single-Cell Transcriptomics: New Insights in Heart Research.
Zhou Y, Zhang J. Circulation. 2020 May 26;141(21):1720-1723. doi: 10.1161/CIRCULATIONAHA.120.046043. Epub 2020 May 26.

74. Hepatic gap junctions amplify alcohol liver injury by propagating cGAS-mediated IRF3 activation.
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